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Swedish University of Agricultural Sciences

Veterinary bacteriology: information about important bacteria
Veterinary bacteriology


Species and subspecies

Click on one of the categories below, or base your search on several criteria

No. of matching species/subspecies etc: 279IdNo. of
basepairs		16S rRNA
ACC-No		rRNA
op.		Updated
    Burkholderia pseudomallei497 247 547DQ10839242023-03-22
    Mycobacterium marinum86 636 827AF45624012023-03-02
    Pseudomonas fluorescens2686 511 547FJ972536 2020-06-11
    Pseudomonas aeruginosa656 264 403Z7665142022-09-22
    Microcystis aeruginosa1845 842 795AP00955222022-05-25
    Burkholderia mallei515 835 527AF11018742023-03-22
    Mycobacterium avium subsp. avium45 475 491AJ53603712023-03-02
    Bordetella bronchiseptica535 339 179AJ27845232023-03-22
    Klebsiella pneumoniae subsp. pneumoniae695 315 120AF13098182022-09-21
    Bacillus cereus215 300 915AE016877132023-03-08
    Bacillus thuringiensis1875 237 682AF290545142023-03-08
    Bacillus anthracis115 227 419AB190217112023-03-08
    Vibrio vulnificus845 211 578X7472692020-10-28
    Bacteroides fragilis1025 205 140X8393562023-03-15
    Vibrio parahaemolyticus835 165 800X74720112020-10-28
    Rhodococcus hoagii105 043 170X8061442023-03-02
    Stenotrophomonas maltophilia1594 851 126AB00850942018-09-27
    Mycobacterium avium subsp. paratuberculosis54 829 781X5293412023-03-02
    Bordetella parapertussis544 773 551AF36657832023-03-22
    Salmonella enterica subsp. enterica704 755 700X8068172023-02-22
    Yersinia pseudotuberculosis794 744 671AF36637572022-04-13
    Aeromonas hydrophila subsp. hydrophila864 744 448X87271102021-02-28
    Aeromonas salmonicida subsp. salmonicida874 702 402X7468192021-12-02
    Yersinia pestis784 653 728AF36638362022-04-13
    Escherichia coli684 646 332X8072572022-09-21
    Leptospira interrogans1014 627 366Z1281722023-03-08
    Yersinia enterocolitica subsp. enterocolitica774 615 899AF36637872023-01-25
    Salmonella enterica subsp. arizonae1574 600 800AF00858072023-02-22
    Shigella flexneri764 599 354X9696372022-04-06
    Aliivibrio salmonicida2174 531 626X70643122021-02-27
    Mycobacterium tuberculosis94 403 837X5889012023-03-02
    Shigella dysenteriae754 369 232X9696672022-04-06
    Mycobacterium bovis64 345 492X5558912023-03-02
    Clostridioides difficile264 290 252AB075770112023-03-08
    Bacillus licheniformis124 222 645CP00000272023-03-08
    Bacillus subtilis subsp. subtilis1334 214 000AB042061102023-03-08
    Bordetella pertussis554 086 189U0495032023-03-22
    Proteus mirabilis724 063 606AF00858272022-09-21
    Paenibacillus larvae1794 046 337X6061982023-03-08
    Vibrio cholerae814 033 465X7469582022-03-25
    Leptospira borgpetersenii1163 876 235AM05056922023-03-08
    Clostridium botulinum, group I2023 863 450L3758582023-03-08
    Edwardsiella ictaluri1723 812 315AB05082682022-04-13
    Edwardsiella tarda1733 760 463AB05082782022-04-13
    Bordetella avium523 732 255AF17766632023-03-22
    Clostridium botulinum, group II2033 659 644L37592112023-03-08
    Legionella pneumophila subsp. pneumophila643 397 754M5915732020-11-05
    Brucella suis483 315 175L2616932023-03-22
    Brucella canis1943 312 769L3758432023-03-22
    Lactobacillus plantarum subsp. plantarum1433 308 274D7921052023-03-08
    Brachyspira intermedia1323 304 788U2303312023-03-08
    Brucella melitensis473 294 931L2616632023-03-22
    Brucella abortus463 278 307AY51355932023-03-22
    Brucella ovis1953 275 590L2616832023-03-22
    Mycobacterium leprae73 268 203X5558712023-03-02
    Enterococcus faecalis1243 218 031DQ41181442023-03-08
    Acinetobacter lwoffii1413 184 320X8166552020-11-05
    Flavobacterium columnare1283 162 432D1265952023-03-15
    Renibacterium salmoninarum23 155 250X5160122023-03-02
    Actinomyces viscosus1203 133 750AJ234053 2023-03-02
    Brachyspira hyodysenteriae973 036 634U1493012023-03-08
    Clostridium perfringens293 031 430AB075767102023-03-09
    Listeria innocua1863 011 208X9852762023-03-08
    Listeria monocytogenes132 944 528X5615362023-03-08
    Listeria ivanovii subsp. ivanovii1682 928 879AJ54993062023-03-08
    Treponema pedis1882 889 325EF06126822023-03-08
    Flavobacterium psychrophilum1292 861 988AF09099162023-03-15
    Enterococcus hirae2602 827 741Y17302 2023-03-08
    Staphylococcus haemolyticus2792 814 816X6610052023-03-08
    Staphylococcus aureus subsp. aureus202 809 422D8335762023-03-08
    Clostridium tetani322 799 251X7477062023-03-08
    Clostridium botulinum, group III242 773 157L37590102023-03-08
    Staphylococcus sciuri subsp. sciuri2722 767 666AB662960 2023-03-08
    Enterococcus faecium1902 698 137AJ27635562023-03-08
    Mannheimia haemolytica602 681 844AF06069962022-11-16
    Brachyspira pilosicoli982 586 443U1492712023-03-08
    Staphylococcus pseudintermedius1352 572 216AJ78097652023-03-08
    Capnocytophaga canimorsus2652 571 406X97246 2023-03-18
    Clostridium novyi272 547 720L37594102023-03-08
    Staphylococcus schleiferi subsp. schleiferi2262 528 396S8356852023-03-08
    Corynebacterium bovis32 522 962D38575 2023-03-02
    Staphylococcus saprophyticus subsp. saprophyticus2582 516 575GQ45606262023-03-08
    Corynebacterium ulcerans2122 502 095X8425642023-03-02
    Micrococcus luteus2232 501 097AJ53619822023-03-02
    Staphylococcus epidermidis2052 499 279D8336352023-03-08
    Corynebacterium diphtheriae subsp. diphtheriae1702 488 000X8191152023-03-02
    Actinobacillus suis1492 484 940AY36289962020-12-10
    Staphylococcus hyicus subsp. (hyicus)232 472 129D8336862023-03-08
    Staphylococcus capitis subsp. capitis2752 443 604AB62612762023-03-08
    Enterococcus cecorum2762 421 598NR_024905 2023-03-08
    Ornithobacterium rhinotracheale2672 399 175U87101 2023-03-15
    Arcobacter butzleri1112 341 251AY62111652023-03-22
    Corynebacterium pseudotuberculosis1172 337 913D3857942023-03-02
    Staphylococcus hominis subsp. hominis2702 335 704NR_03695642023-03-08
    Trueperella pyogenes12 295 822X7922562023-03-02
    Actinobacillus pleuropneumoniae572 274 482AF22428392021-06-29
    Glaesserella parasuis582 269 156 M7506562021-09-16
    Pasteurella multocida subsp. multocida562 257 487AY07899962020-12-10
    Streptococcus equi subsp. equi142 253 793EF40603262023-03-08
    Neisseria gonorrhoeae1742 232 025X0771442023-03-22
    Mannheimia varigena2002 228 291AF05389362018-12-06
    Streptococcus agalactiae162 211 485AB00247972023-03-08
    Riemerella anatipestifer1752 155 121U6010132023-03-15
    Streptococcus dysgalactiae subsp. equisimilis1212 106 340AJ31964352023-03-08
    Streptococcus suis1472 100 000AB00252542023-03-08
    Leuconostoc mesenteroides subsp. mesenteroides2612 075 763NR_074957 2023-03-08
    Streptococcus pneumoniae1452 046 115AF00393042023-03-08
    Streptococcus equi subsp. zooepidemicus152 024 171EF40603452023-03-08
    Histophilus somni592 007 700AF54938752021-09-26
    Moraxella bovis672 000 000AF005183 2022-09-22
    Coxiella burnetii1501 995 281AE01682812021-06-29
    Bartonella henselae1381 931 000BX89769922023-03-22
    Streptococcus pyogenes181 899 877AB00252162023-03-08
    Francisella tularensis subsp. holarctica631 895 994AJ69886432023-01-25
    Francisella tularensis subsp. tularensis621 892 819Z2193132023-01-25
    Melissococcus plutonius1801 891 014X7575142023-03-08
    Campylobacter coli1091 860 000M59073 2023-03-22
    Streptococcus uberis191 852 352AB00252652023-03-08
    Helicobacter hepaticus921 799 146U0757512023-03-22
    Erysipelothrix rhusiopathiae431 787 941AB03420072023-03-08
    Campylobacter fetus subsp. fetus901 773 615DQ17412732023-03-22
    Taylorella equigenitalis501 732 123DQ09955332023-03-22
    Streptobacillus moniliformis1831 662 578CP00177952023-03-15
    Helicobacter pylori931 643 831Z2574122023-03-22
    Campylobacter jejuni subsp. jejuni891 641 481L1463032023-03-22
    Taylorella asinigenitalis1371 638 559AF06772932023-03-22
    Campylobacter lari1441 562 000L04316 2023-03-22
    Ehrlichia ruminantium1121 499 920X6165912023-03-22
    Acholeplasma laidlawii1601 496 992U1490522023-03-15
    Anaplasma phagocytophilum451 471 282AF17216412023-03-22
    Lawsonia intracellularis1081 457 619U3014722023-03-22
    Dichelobacter nodosus1041 389 350DQ01629032022-10-02
    Rickettsia helvetica2281 369 927CM001467 (region 522930-524428)12023-03-22
    Ehrlichia canis1811 315 030M7322112023-03-22
    Rickettsia rickettsii441 257 710L3621712023-03-22
    Chlamydia pneumoniae2221 225 935D8571812023-03-15
    Mycoplasma mycoides subsp. mycoides381 211 703U2603922023-03-15
    Chlamydia caviae2201 173 390D8570812023-03-15
    Chlamydia psittaci961 171 660AB00177812023-03-15
    Chlamydia felis951 166 239D8570112023-03-15
    Mycoplasma mycoides subsp. capri2061 153 998U2603722023-03-15
    Eperythrozoon felis421 147 259U8856312023-03-15
    Chlamydia abortus941 144 377D8570912023-03-15
    Treponema pallidum subsp. pallidum1001 138 011M8872622023-03-08
    Treponema paraluiscuniculi1341 133 390JX12054622023-03-08
    Rickettsia prowazekii1461 111 523AJ23527212023-03-22
    Chlamydia pecorum2211 106 409D8831712023-03-15
    Mesomycoplasma dispar2301 090 351AF412979 2023-03-15
    Chlamydia muridarum2181 072 950D8571822023-03-15
    Chlamydia trachomatis1711 044 459D8906712023-03-15
    Mycoplasma capricolum subsp. capripneumoniae351 016 760M9472822023-03-15
    Mycoplasma capricolum subsp. capricolum1191 010 023U2604622023-03-15
    Mycoplasmopsis bovis341 003 404U0296822023-03-15
    Mycoplasmoides gallisepticum36996 422M2244122023-03-15
    Mycoplasmopsis pulmonis40963 879AF12558212023-03-15
    Borrelia burgdorferi99910 724M5929312023-03-08
    Borrelia afzelii113905 394AY34203422023-03-08
    Borrelia anserina208904 790U4228412023-03-08
    Borrelia garinii114904 246X8519912023-03-08
    Mesomycoplasma hyopneumoniae37897 405AE01724312023-03-15
    Neorickettsia risticii165879 977M2129012023-03-22
    Mycoplasmopsis agalactiae33877 438U4476322023-03-15
    Mycoplasmopsis felis178841 695U16758 2023-03-15
    Mesomycoplasma hyorhinis213829 709AF41298212023-03-15
    Mycoplasmoides pneumoniae39816 394M2906112023-03-15
    Mycoplasmopsis synoviae214799 476X5208322023-03-15
    Mesomycoplasma flocculare231778 866L2221012023-03-15
    Eperythrozoon suis41742 431AY49208612023-03-15
    Mycoplasmopsis meleagridis215634 182L24106 2023-03-15
    Streptococcus dysgalactiae subsp. dysgalactiae17AY584478 2023-03-08
    Staphylococcus intermedius22D83369 2023-03-08
    Staphylococcus schleiferi subsp. coagulans189AB009945 2023-03-08
    Clostridium chauvoei25U51843 2023-03-08
    Clostridium piliforme28L07416 2023-03-08
    Clostridium septicum30U59278 2023-03-08
    Paeniclostridium sordellii31AB075771 2023-03-08
    Helcococcus ovis278Y16279 2023-03-08
    Neisseria animaloris277KY847916 2023-03-22
    Nicoletella semolina61AY508816 2022-09-22
    Pseudomonas anguilliseptica66X99540 2018-09-27
    Plesiomonas shigelloides71M59159 2022-04-15
    Proteus vulgaris73DQ885257 2022-09-21
    Serratia marcescens subsp. marcescens74AJ233431 2022-04-13
    Yersinia ruckeri80AF366385 2022-04-13
    Vibrio alginolyticus82X56576 2020-01-23
    Listonella anguillarum85X16895 2018-09-13
    Aeromonas salmonicida subsp. achromogenes88AY910844 2018-09-13
    Campylobacter fetus subsp. venerealis91DQ174131 2023-03-22
    Fusobacterium necrophorum subsp. necrophorum103AJ867039 2023-03-15
    Corynebacterium renale105M29553 2023-03-02
    Actinobacillus lignieresii106M75068 2021-02-28
    Actinobacillus equuli subsp. equuli107M75072 2022-09-22
    Campylobacter upsaliensis110L14628 2023-03-22
    Leptospira kirschneri115AY631895 2023-03-08
    Actinomyces bovis118X53224 2023-03-02
    Staphylococcus felis122D83364 2023-03-08
    Nocardia asteroides123X84850 2023-03-02
    Actinobaculum suis125S83623 2023-03-02
    Dermatophilus congolensis126AJ243918 2023-03-02
    Bibersteinia trehalosi127AY362927 2019-02-15
    Pasteurella pneumotropica130M75083 2023-03-22
    Brachyspira alvinipulli131EF455559 2023-03-08
    Avibacterium paragallinarum136AY498868 2020-03-18
    Treponema phagedenis139DQ470655 2023-03-08
    Brachyspira suanatina140DQ473576 2023-03-08
    Citrobacter freundii142AJ233408 2022-09-21
    Streptococcus porcinus148X58315 2023-03-08
    Fusobacterium canifelinum151AY162221 2023-03-15
    Fusobacterium equinum152AJ295750 2023-03-15
    Fusobacterium necrophorum subsp. funduliforme153EF447425 2023-03-15
    Pasteurella caballi154AY362918 2020-10-28
    Pasteurella dagmatis155AY362920 2022-09-21
    Klebsiella oxytoca156EU231629 2022-04-06
    Peptoniphilus indolicus158D14147 2023-03-08
    Brachyspira aalborgi161Z22781 2023-03-08
    Clostridium haemolyticum162AB037910 2023-03-08
    Brochothrix thermosphacta163M58798 2023-03-08
    Prevotella melaninogenica164L16469 2023-03-15
    Morganella morganii subsp. morganii166AY043390 2022-04-13
    Francisella noatunensis subsp. noatunensis167EF490212 2018-09-19
    Corynebacterium kutscheri169D37802 2023-03-02
    Chlamydia suis219U73110 2023-03-15
    Gallibacterium anatis176AF228001 2019-05-21
    Actinobacillus rossi177AY224289 2020-09-21
    Streptococcus devriesei182AJ564067 2023-03-08
    Staphylococcus aureus subsp. anaerobius185D83355 2023-03-08
    Streptococcus equi subsp. ruminatorum191AJ605748 2023-03-08
    Brucella ceti192AM158982 2023-03-22
    Brucella pinnipedialis193AM158981 2023-03-22
    Bartonella clarridgeiae196X89208 2023-03-22
    Bartonella elizabethae197L01260 2023-03-22
    Bartonella vinsonii subsp. berkhoffii198L35052 2023-03-22
    Mannheimia granulomatis199AF053902 2021-09-26
    Moraxella osloensis201AF005190 2018-09-27
    Clostridium botulinum, group IV204X68316 2023-03-08
    Streptococcus canis207DQ303184 2023-03-08
    Ureaplasma diversum209D78650 2023-03-15
    Salmonella spp.210 2022-04-06
    Salmonella enterica211 2023-02-22
    Metamycoplasma hyosynoviae216U26730 2023-03-15
    Klebsiella mobilis224AB004750 2022-04-06
    Staphylococcus delphini225AB009938 2023-03-08
    Erysipelothrix tonsillarum227AB055906 2023-03-08
    Mycoplasma leachii229U2605422023-03-15
    Brachyspira innocens232NR_044763 2023-03-08
    Borrelia theileri233KF569941 2023-03-08
    Borrelia coriaceae234U42286 2023-03-08
    Prevotella heparinolytica235L16487 2023-03-15
    Porphyromonas levii236L16493 2023-03-15
    Porphyromonas gingivalis237AB035459 2023-03-15
    Helicobacter bizzozeronii238Y09404 2023-03-22
    Helicobacter canis239AY631945 2023-03-22
    Helicobacter salomonis240U89351 2023-03-22
    Helicobacter felis241M57398 2023-03-22
    Helicobacter bilis242U18766 2023-03-22
    Helicobacter heilmannii243HM625820 2023-03-22
    Helicobacter suis244EF204589 2023-03-22
    Helicobacter mustelae245M35048 2023-03-22
    Campylobacter jejuni subsp. doylei246DQ174144 2023-03-22
    Campylobacter hyointestinalis subsp. hyointestinalis247AF097689 2023-03-22
    Campylobacter hyointestinalis subsp. lawsonii248AF097685 2023-03-22
    Campylobacter helveticus249U03022 2023-03-22
    Arcobacter skirrowii250L14625 2023-03-22
    Bartonella schoenbuchensis251AJ278187 2023-03-22
    Crossiella equi252AF114806 2023-03-02
    Mycobacterium ulcerans254X88926 2023-03-02
    Mycobacterium caprae253AJ131120 2023-03-02
    Nocardia farcinica255Z36936 2023-03-02
    Corynebacterium cystitidis256X84252 2023-03-02
    Buchananella hordeovulneris257 2023-03-02
    Clostridium colinum259X76748 2023-03-08
    Clostridium tyrobutyricum262 2023-03-08
    Weissella koreensis263AY035891 2023-03-08
    Filifactor villosus264AF537211 2023-03-08
    Pantoea agglomerans266AJ233423 2022-04-13
    Staphylococcus chromogenes269D83360 2023-03-08
    Staphylococcus warneri271L37603 2023-03-08
    Corynebacterium confusum273Y15886 2023-03-02
    Corynebacterium freneyi274AJ292762 2023-03-02

News

New names of bacterial phyla

The taxonomic category phylum was previously not regulated by the International Code of Nomenclature of Prokaryotes (ICNP), but now this has changed and it was decided to revise the names of bacterial phyla. All phyla must be written in italics (which has been done on VetBact also before) and have the ending -ota.

Published 2023-03-01. Read more...
The taxonomy of chlamydias

Species within the family Chlamydiaceae were previously divided into two genera Chlamydia and Chlamydophila. However, the differences between these two genera were not that great and many research groups have not accepted this division. Therefore, the genus Chlamydophila has been returned to the genus Chlamydia and this change has now been incorporated in VetBact

 Published 2023-03-15. Read more...

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