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Swedish University of Agricultural Sciences

Veterinary bacteriology: information about important bacteria
Veterinary bacteriology


Species and subspecies

Click on one of the categories below, or base your search on several criteria

No. of matching species/subspecies etc: 279IdNo. of
basepairs		16S rRNA
ACC-No		rRNA
op.		Updated
    Clostridium perfringens293 031 430AB075767102023-08-14
    Pasteurella multocida subsp. multocida562 257 487AY07899962023-08-14
    Streptococcus dysgalactiae subsp. equisimilis1212 106 340AJ31964352023-08-11
    Staphylococcus saprophyticus subsp. saprophyticus2582 516 575GQ45606262023-05-10
    Klebsiella pneumoniae subsp. pneumoniae695 315 120AF13098182023-03-29
    Stenotrophomonas maltophilia1594 851 126AB00850942023-03-29
    Plesiomonas shigelloides71M59159 2023-03-29
    Vibrio vulnificus845 211 578X7472692023-03-29
    Vibrio parahaemolyticus835 165 800X74720112023-03-29
    Vibrio cholerae814 033 465X7469582023-03-29
    Vibrio alginolyticus82X56576 2023-03-29
    Listonella anguillarum85X16895 2023-03-29
    Aliivibrio salmonicida2174 531 626X70643122023-03-29
    Francisella tularensis subsp. tularensis621 892 819Z2193132023-03-29
    Francisella tularensis subsp. holarctica631 895 994AJ69886432023-03-29
    Francisella noatunensis subsp. noatunensis167EF490212 2023-03-29
    Pseudomonas fluorescens2686 511 547FJ972536 2023-03-29
    Pseudomonas anguilliseptica66X99540 2023-03-29
    Pseudomonas aeruginosa656 264 403Z7665142023-03-29
    Moraxella osloensis201AF005190 2023-03-29
    Moraxella bovis672 000 000AF005183 2023-03-29
    Acinetobacter lwoffii1413 184 320X8166552023-03-29
    Pasteurella pneumotropica130M75083 2023-03-29
    Pasteurella dagmatis155AY362920 2023-03-29
    Pasteurella caballi154AY362918 2023-03-29
    Nicoletella semolina61AY508816 2023-03-29
    Mannheimia varigena2002 228 291AF05389362023-03-29
    Mannheimia haemolytica602 681 844AF06069962023-03-29
    Mannheimia granulomatis199AF053902 2023-03-29
    Histophilus somni592 007 700AF54938752023-03-29
    Glaesserella parasuis582 269 156M7506562023-03-29
    Gallibacterium anatis176AF228001 2023-03-29
    Bibersteinia trehalosi127AY362927 2023-03-29
    Avibacterium paragallinarum136AY498868 2023-03-29
    Actinobacillus suis1492 484 940AY36289962023-03-29
    Actinobacillus rossi177AY224289 2023-03-29
    Actinobacillus lignieresii106M75068 2023-03-29
    Actinobacillus equuli subsp. equuli107M75072 2023-03-29
    Legionella pneumophila subsp. pneumophila643 397 754M5915732023-03-29
    Coxiella burnetii1501 995 281AE01682812023-03-29
    Yersinia ruckeri80AF366385 2023-03-29
    Yersinia pseudotuberculosis794 744 671AF36637572023-03-29
    Yersinia pestis784 653 728AF36638362023-03-29
    Yersinia enterocolitica subsp. enterocolitica774 615 899AF36637872023-03-29
    Serratia marcescens subsp. marcescens74AJ233431 2023-03-29
    Proteus vulgaris73DQ885257 2023-03-29
    Proteus mirabilis724 063 606AF00858272023-03-29
    Morganella morganii subsp. morganii166AY043390 2023-03-29
    Edwardsiella tarda1733 760 463AB05082782023-03-29
    Edwardsiella ictaluri1723 812 315AB05082682023-03-29
    Pantoea agglomerans266AJ233423 2023-03-29
    Shigella flexneri764 599 354X9696372023-03-29
    Shigella dysenteriae754 369 232X9696672023-03-29
    Salmonella spp.210 2023-03-29
    Salmonella enterica subsp. enterica704 755 700X8068172023-03-29
    Salmonella enterica subsp. arizonae1574 600 800AF00858072023-03-29
    Salmonella enterica211 2023-03-29
    Klebsiella oxytoca156EU231629 2023-03-29
    Klebsiella mobilis224AB004750 2023-03-29
    Escherichia coli684 646 332X8072572023-03-29
    Citrobacter freundii142AJ233408 2023-03-29
    Dichelobacter nodosus1041 389 350DQ01629032023-03-29
    Aeromonas salmonicida subsp. achromogenes88AY910844 2023-03-29
    Aeromonas salmonicida subsp. salmonicida874 702 402X7468192023-03-29
    Aeromonas hydrophila subsp. hydrophila864 744 448X87271102023-03-29
    Neisseria gonorrhoeae1742 232 025X0771442023-03-22
    Burkholderia pseudomallei497 247 547DQ10839242023-03-22
    Burkholderia mallei515 835 527AF11018742023-03-22
    Lawsonia intracellularis1081 457 619U3014722023-03-22
    Neisseria animaloris277KY847916 2023-03-22
    Taylorella equigenitalis501 732 123DQ09955332023-03-22
    Taylorella asinigenitalis1371 638 559AF06772932023-03-22
    Bordetella pertussis554 086 189U0495032023-03-22
    Bordetella parapertussis544 773 551AF36657832023-03-22
    Bordetella bronchiseptica535 339 179AJ27845232023-03-22
    Bordetella avium523 732 255AF17766632023-03-22
    Brucella suis483 315 175L2616932023-03-22
    Brucella pinnipedialis193AM158981 2023-03-22
    Brucella ovis1953 275 590L2616832023-03-22
    Brucella melitensis473 294 931L2616632023-03-22
    Brucella ceti192AM158982 2023-03-22
    Brucella canis1943 312 769L3758432023-03-22
    Brucella abortus463 278 307AY51355932023-03-22
    Bartonella vinsonii subsp. berkhoffii198L35052 2023-03-22
    Bartonella schoenbuchensis251AJ278187 2023-03-22
    Bartonella henselae1381 931 000BX89769922023-03-22
    Bartonella elizabethae197L01260 2023-03-22
    Bartonella clarridgeiae196X89208 2023-03-22
    Rickettsia rickettsii441 257 710L3621712023-03-22
    Rickettsia prowazekii1461 111 523AJ23527212023-03-22
    Rickettsia helvetica2281 369 927CM001467 (region 522930-524428)12023-03-22
    Neorickettsia risticii165879 977M2129012023-03-22
    Ehrlichia ruminantium1121 499 920X6165912023-03-22
    Anaplasma phagocytophilum451 471 282AF17216412023-03-22
    Ehrlichia canis1811 315 030M7322112023-03-22
    Helicobacter suis244EF204589 2023-03-22
    Helicobacter salomonis240U89351 2023-03-22
    Helicobacter pylori931 643 831Z2574122023-03-22
    Helicobacter mustelae245M35048 2023-03-22
    Helicobacter hepaticus921 799 146U0757512023-03-22
    Helicobacter heilmannii243HM625820 2023-03-22
    Helicobacter felis241M57398 2023-03-22
    Helicobacter canis239AY631945 2023-03-22
    Helicobacter bizzozeronii238Y09404 2023-03-22
    Helicobacter bilis242U18766 2023-03-22
    Campylobacter upsaliensis110L14628 2023-03-22
    Campylobacter lari1441 562 000L04316 2023-03-22
    Campylobacter jejuni subsp. jejuni891 641 481L1463032023-03-22
    Campylobacter jejuni subsp. doylei246DQ174144 2023-03-22
    Campylobacter hyointestinalis subsp. lawsonii248AF097685 2023-03-22
    Campylobacter hyointestinalis subsp. hyointestinalis247AF097689 2023-03-22
    Campylobacter helveticus249U03022 2023-03-22
    Campylobacter fetus subsp. venerealis91DQ174131 2023-03-22
    Campylobacter fetus subsp. fetus901 773 615DQ17412732023-03-22
    Arcobacter skirrowii250L14625 2023-03-22
    Campylobacter coli1091 860 000M59073 2023-03-22
    Arcobacter butzleri1112 341 251AY62111652023-03-22
    Capnocytophaga canimorsus2652 571 406X97246 2023-03-18
    Eperythrozoon suis41742 431AY49208612023-03-15
    Eperythrozoon felis421 147 259U8856312023-03-15
    Ureaplasma diversum209D78650 2023-03-15
    Mycoplasmoides pneumoniae39816 394M2906112023-03-15
    Mycoplasmoides gallisepticum36996 422M2244122023-03-15
    Mycoplasmopsis synoviae214799 476X5208322023-03-15
    Mycoplasmopsis pulmonis40963 879AF12558212023-03-15
    Mycoplasmopsis meleagridis215634 182L24106 2023-03-15
    Mycoplasmopsis felis178841 695U16758 2023-03-15
    Mycoplasmopsis bovis341 003 404U0296822023-03-15
    Mycoplasmopsis agalactiae33877 438U4476322023-03-15
    Metamycoplasma hyosynoviae216U26730 2023-03-15
    Mesomycoplasma hyorhinis213829 709AF41298212023-03-15
    Mesomycoplasma hyopneumoniae37897 405AE01724312023-03-15
    Mesomycoplasma flocculare231778 866L2221012023-03-15
    Mesomycoplasma dispar2301 090 351AF412979 2023-03-15
    Mycoplasma leachii229U2605422023-03-15
    Mycoplasma mycoides subsp. mycoides381 211 703U2603922023-03-15
    Mycoplasma mycoides subsp. capri2061 153 998U2603722023-03-15
    Mycoplasma capricolum subsp. capripneumoniae351 016 760M9472822023-03-15
    Mycoplasma capricolum subsp. capricolum1191 010 023U2604622023-03-15
    Acholeplasma laidlawii1601 496 992U1490522023-03-15
    Streptobacillus moniliformis1831 662 578CP00177952023-03-15
    Fusobacterium necrophorum subsp. necrophorum103AJ867039 2023-03-15
    Fusobacterium necrophorum subsp. funduliforme153EF447425 2023-03-15
    Fusobacterium equinum152AJ295750 2023-03-15
    Fusobacterium canifelinum151AY162221 2023-03-15
    Riemerella anatipestifer1752 155 121U6010132023-03-15
    Ornithobacterium rhinotracheale2672 399 175U87101 2023-03-15
    Flavobacterium psychrophilum1292 861 988AF09099162023-03-15
    Flavobacterium columnare1283 162 432D1265952023-03-15
    Prevotella melaninogenica164L16469 2023-03-15
    Prevotella heparinolytica235L16487 2023-03-15
    Porphyromonas levii236L16493 2023-03-15
    Porphyromonas gingivalis237AB035459 2023-03-15
    Bacteroides fragilis1025 205 140X8393562023-03-15
    Chlamydia trachomatis1711 044 459D8906712023-03-15
    Chlamydia pneumoniae2221 225 935D8571812023-03-15
    Chlamydia pecorum2211 106 409D8831712023-03-15
    Chlamydia muridarum2181 072 950D8571822023-03-15
    Chlamydia suis219U73110 2023-03-15
    Chlamydia caviae2201 173 390D8570812023-03-15
    Chlamydia psittaci961 171 660AB00177812023-03-15
    Chlamydia felis951 166 239D8570112023-03-15
    Chlamydia abortus941 144 377D8570912023-03-15
    Leptospira kirschneri115AY631895 2023-03-08
    Leptospira interrogans1014 627 366Z1281722023-03-08
    Leptospira borgpetersenii1163 876 235AM05056922023-03-08
    Treponema phagedenis139DQ470655 2023-03-08
    Treponema pedis1882 889 325EF06126822023-03-08
    Treponema paraluiscuniculi1341 133 390JX12054622023-03-08
    Treponema pallidum subsp. pallidum1001 138 011M8872622023-03-08
    Brachyspira suanatina140DQ473576 2023-03-08
    Brachyspira pilosicoli982 586 443U1492712023-03-08
    Brachyspira intermedia1323 304 788U2303312023-03-08
    Brachyspira innocens232NR_044763 2023-03-08
    Brachyspira hyodysenteriae973 036 634U1493012023-03-08
    Brachyspira alvinipulli131EF455559 2023-03-08
    Brachyspira aalborgi161Z22781 2023-03-08
    Borrelia theileri233KF569941 2023-03-08
    Borrelia garinii114904 246X8519912023-03-08
    Borrelia coriaceae234U42286 2023-03-08
    Borrelia burgdorferi99910 724M5929312023-03-08
    Borrelia anserina208904 790U4228412023-03-08
    Borrelia afzelii113905 394AY34203422023-03-08
    Weissella koreensis263AY035891 2023-03-08
    Streptococcus uberis191 852 352AB00252652023-03-08
    Streptococcus suis1472 100 000AB00252542023-03-08
    Streptococcus pyogenes181 899 877AB00252162023-03-08
    Streptococcus porcinus148X58315 2023-03-08
    Streptococcus pneumoniae1452 046 115AF00393042023-03-08
    Streptococcus equi subsp. zooepidemicus152 024 171EF40603452023-03-08
    Streptococcus equi subsp. ruminatorum191AJ605748 2023-03-08
    Streptococcus equi subsp. equi142 253 793EF40603262023-03-08
    Streptococcus dysgalactiae subsp. dysgalactiae17AY584478 2023-03-08
    Streptococcus devriesei182AJ564067 2023-03-08
    Streptococcus canis207DQ303184 2023-03-08
    Streptococcus agalactiae162 211 485AB00247972023-03-08
    Erysipelothrix tonsillarum227AB055906 2023-03-08
    Erysipelothrix rhusiopathiae431 787 941AB03420072023-03-08
    Paeniclostridium sordellii31AB075771 2023-03-08
    Staphylococcus warneri271L37603 2023-03-08
    Staphylococcus sciuri subsp. sciuri2722 767 666AB662960 2023-03-08
    Staphylococcus schleiferi subsp. schleiferi2262 528 396S8356852023-03-08
    Staphylococcus schleiferi subsp. coagulans189AB009945 2023-03-08
    Staphylococcus pseudintermedius1352 572 216AJ78097652023-03-08
    Staphylococcus intermedius22D83369 2023-03-08
    Staphylococcus hyicus subsp. (hyicus)232 472 129D8336862023-03-08
    Staphylococcus hominis subsp. hominis2702 335 704NR_03695642023-03-08
    Staphylococcus haemolyticus2792 814 816X6610052023-03-08
    Staphylococcus felis122D83364 2023-03-08
    Staphylococcus epidermidis2052 499 279D8336352023-03-08
    Staphylococcus delphini225AB009938 2023-03-08
    Staphylococcus chromogenes269D83360 2023-03-08
    Staphylococcus capitis subsp. capitis2752 443 604AB62612762023-03-08
    Staphylococcus aureus subsp. aureus202 809 422D8335762023-03-08
    Staphylococcus aureus subsp. anaerobius185D83355 2023-03-08
    Peptoniphilus indolicus158D14147 2023-03-08
    Paenibacillus larvae1794 046 337X6061982023-03-08
    Melissococcus plutonius1801 891 014X7575142023-03-08
    Brochothrix thermosphacta163M58798 2023-03-08
    Listeria monocytogenes132 944 528X5615362023-03-08
    Listeria ivanovii subsp. ivanovii1682 928 879AJ54993062023-03-08
    Listeria innocua1863 011 208X9852762023-03-08
    Leuconostoc mesenteroides subsp. mesenteroides2612 075 763NR_074957 2023-03-08
    Lactobacillus plantarum subsp. plantarum1433 308 274D7921052023-03-08
    Helcococcus ovis278Y16279 2023-03-08
    Filifactor villosus264AF537211 2023-03-08
    Enterococcus hirae2602 827 741Y17302 2023-03-08
    Enterococcus faecium1902 698 137AJ27635562023-03-08
    Enterococcus faecalis1243 218 031DQ41181442023-03-08
    Enterococcus cecorum2762 421 598NR_024905 2023-03-08
    Clostridium tyrobutyricum262 2023-03-08
    Clostridium tetani322 799 251X7477062023-03-08
    Clostridium septicum30U59278 2023-03-08
    Clostridium piliforme28L07416 2023-03-08
    Clostridium novyi272 547 720L37594102023-03-08
    Clostridium haemolyticum162AB037910 2023-03-08
    Clostridium colinum259X76748 2023-03-08
    Clostridium chauvoei25U51843 2023-03-08
    Clostridium botulinum, group IV204X68316 2023-03-08
    Clostridium botulinum, group III242 773 157L37590102023-03-08
    Clostridium botulinum, group II2033 659 644L37592112023-03-08
    Clostridium botulinum, group I2023 863 450L3758582023-03-08
    Clostridioides difficile264 290 252AB075770112023-03-08
    Bacillus thuringiensis1875 237 682AF290545142023-03-08
    Bacillus subtilis subsp. subtilis1334 214 000AB042061102023-03-08
    Bacillus licheniformis124 222 645CP00000272023-03-08
    Bacillus cereus215 300 915AE016877132023-03-08
    Bacillus anthracis115 227 419AB190217112023-03-08
    Mycobacterium marinum86 636 827AF45624012023-03-02
    Crossiella equi252AF114806 2023-03-02
    Rhodococcus hoagii105 043 170X8061442023-03-02
    Nocardia farcinica255Z36936 2023-03-02
    Nocardia asteroides123X84850 2023-03-02
    Mycobacterium ulcerans254X88926 2023-03-02
    Mycobacterium tuberculosis94 403 837X5889012023-03-02
    Mycobacterium leprae73 268 203X5558712023-03-02
    Mycobacterium caprae253AJ131120 2023-03-02
    Mycobacterium bovis64 345 492X5558912023-03-02
    Mycobacterium avium subsp. paratuberculosis54 829 781X5293412023-03-02
    Mycobacterium avium subsp. avium45 475 491AJ53603712023-03-02
    Corynebacterium ulcerans2122 502 095X8425642023-03-02
    Corynebacterium renale105M29553 2023-03-02
    Corynebacterium pseudotuberculosis1172 337 913D3857942023-03-02
    Corynebacterium kutscheri169D37802 2023-03-02
    Corynebacterium freneyi274AJ292762 2023-03-02
    Corynebacterium diphtheriae subsp. diphtheriae1702 488 000X8191152023-03-02
    Corynebacterium cystitidis256X84252 2023-03-02
    Corynebacterium confusum273Y15886 2023-03-02
    Corynebacterium bovis32 522 962D38575 2023-03-02
    Renibacterium salmoninarum23 155 250X5160122023-03-02
    Micrococcus luteus2232 501 097AJ53619822023-03-02
    Dermatophilus congolensis126AJ243918 2023-03-02
    Trueperella pyogenes12 295 822X7922562023-03-02
    Buchananella hordeovulneris257 2023-03-02
    Actinobaculum suis125S83623 2023-03-02
    Actinomyces viscosus1203 133 750AJ234053 2023-03-02
    Actinomyces bovis118X53224 2023-03-02
    Microcystis aeruginosa1845 842 795AP00955222022-05-25
    Actinobacillus pleuropneumoniae572 274 482AF22428392021-06-29

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